Streamlining Analysis for Automated Neuronal Membrane Segmentation Pipelines (neuroXplorer)

Streamlining Analysis for Automated Neuronal Membrane Segmentation Pipelines (neuroXplorer)

Field: Connectomics (Computational Neuroscience)

Link: https://github.com/Connectomics-Classes/NeuroXplorer

Project: Open Connectome Project - NeuroData

About:

NeuroXplorer is a set of tools and programs that optimizes the pipeline for automated neuronal membrane segmentation by running comparisons using the watershed image processing algorithm.

The program makes it easier for a computer to detect neurons across three-dimensional high definition electron microscopy brain image stacks. This work was made possible under then mentorship of Dr. Joshua Vogelstein and Dr. William Roncal. The project is part of NeuroData's Open Connectome Project.

Research Remix

Through the JHU Digital Media Center program, Research Remix, I was able to collaborate with art students from MICA (Maryland Institute College of Art) to create visual representations of my work.

The visual illustration in this gallery was created by Lindsay Farrell.

 

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